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1

Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS

Fleur Mougin, Olivier Bodenreider, Anita Burgun

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 554 KB

english, 2009

2

Assessing the consistency of a biomedical terminology through lexical knowledge

Olivier Bodenreider, Anita Burgun, Thomas C Rindflesch

Journal:

International Journal of Medical Informatics

Year:

2002

Language:

english

File:

PDF, 124 KB

english, 2002

3

The new International Classification of Diseases 11th edition: a comparative analysis with ICD-10 and ICD-10-CM

Fung, Kin Wah, Xu, , Julia, Bodenreider, Olivier

Journal:

Journal of the American Medical Informatics Association

Year:

2020

File:

PDF, 527 KB

2020

4

Ontological research and its applications to the biomedical domain

Miguel E. Ruiz, Olivier Bodenreider, Eric Little, Padmini Srinivasan

Journal:

Proceedings of the American Society for Information Science and Technology

Year:

2005

Language:

english

File:

PDF, 23 KB

english, 2005

5

Law and order: Assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy

Songmao Zhang, Olivier Bodenreider

Journal:

Computers in Biology and Medicine

Year:

2006

Language:

english

File:

PDF, 288 KB

english, 2006

6

The foundational model of anatomy in OWL: Experience and perspectives

Christine Golbreich, Songmao Zhang, Olivier Bodenreider

Journal:

Web Semantics: Science, Services and Agents on the World Wide Web

Year:

2006

Language:

english

File:

PDF, 886 KB

english, 2006

7

Comparing two approaches for aligning representations of anatomy

Songmao Zhang, Peter Mork, Olivier Bodenreider, Philip A. Bernstein

Journal:

Artificial Intelligence in Medicine

Year:

2007

Language:

english

File:

PDF, 308 KB

english, 2007

8

Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies

Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun

Journal:

Artificial Intelligence in Medicine

Year:

2007

Language:

english

File:

PDF, 752 KB

english, 2007

9

Exploring semantic groups through visual approaches

Olivier Bodenreider, Alexa T McCray

Journal:

Journal of Biomedical Informatics

Year:

2003

Language:

english

File:

PDF, 1.08 MB

english, 2003

10

An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence

Satya S. Sahoo, Olivier Bodenreider, Joni L. Rutter, Karen J. Skinner, Amit P. Sheth

Journal:

Journal of Biomedical Informatics

Year:

2008

Language:

english

File:

PDF, 1.14 MB

english, 2008

11

The caBIG terminology review process

James J. Cimino, Terry F. Hayamizu, Olivier Bodenreider, Brian Davis, Grace A. Stafford, Martin Ringwald

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 507 KB

english, 2009

12

Auditing associative relations across two knowledge sources

Lowell T. Vizenor, Olivier Bodenreider, Alexa T. McCray

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 1.52 MB

english, 2009

13

A graph-based approach to auditing RxNorm

Olivier Bodenreider, Lee B. Peters

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 825 KB

english, 2009

14

A unified framework for managing provenance information in translational research

Satya S Sahoo, Vinh Nguyen, Olivier Bodenreider, Priti Parikh, Todd Minning, Amit P Sheth

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.53 MB

english, 2011

15

Mapping data elements to terminological resources for integrating biomedical data sources

Fleur Mougin, Anita Burgun, Olivier Bodenreider

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 357 KB

english, 2006

16

Advancing translational research with the Semantic Web

Alan Ruttenberg, Tim Clark, William Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M Scott Marshall,

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 381 KB

english, 2007

17

Global similarity and local divergence in human and mouse gene co-expression networks

Panayiotis Tsaparas, Leonardo Mariño-Ramírez, Olivier Bodenreider, Eugene V Koonin, I King Jordan

Journal:

BMC Evolutionary Biology

Year:

2006

Language:

english

File:

PDF, 1.56 MB

english, 2006

18

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside

Joanne S Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christine K Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia

Journal:

Journal of Biomedical Semantics

Year:

2011

Language:

english

File:

PDF, 753 KB

english, 2011

19

A mutation-centric approach to identifying pharmacogenomic relations in text

Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider

Journal:

Journal of Biomedical Informatics

Year:

2012

Language:

english

File:

PDF, 256 KB

english, 2012

20

[Lecture Notes in Computer Science] Data Integration in the Life Sciences Volume 7348 ||

Bodenreider, Olivier, Rance, Bastien

Year:

2012

Language:

english

File:

PDF, 5.09 MB

english, 2012

21

A graph-based recovery and decomposition of Swanson’s hypothesis using semantic predications

Cameron, Delroy, Bodenreider, Olivier, Yalamanchili, Hima, Danh, Tu, Vallabhaneni, Sreeram, Thirunarayan, Krishnaprasad, Sheth, Amit P., Rindflesch, Thomas C.

Journal:

Journal of Biomedical Informatics

Year:

2013

Language:

english

File:

PDF, 916 KB

english, 2013

22

METROPOLITAN ASYLUMS BOARD STATISTICS.

Cameron, Delroy, Bodenreider, Olivier, Yalamanchili, Hima, Danh, Tu, Vallabhaneni, Sreeram, Thirunarayan, Krishnaprasad, Sheth, Amit P., Rindflesch, Thomas C.

Journal:

Year:

1897

Language:

english

File:

PDF, 455 KB

english, 1897

23

A framework for assessing the consistency of drug classes across sources

Rainer Winnenburg,Olivier Bodenreider

Journal:

Journal of Biomedical Semantics

Year:

2014

Language:

english

File:

PDF, 772 KB

english, 2014

24

Periosteum and bone marrow in bone lengthening: A DEXA quantitative evaluation in rabbits

Guichet, Jean-Marc, Braillon, Pierre, Bodenreider, Olivier, Lascombes, Pierre

Journal:

Acta Orthopaedica

Year:

1998

Language:

english

File:

PDF, 450 KB

english, 1998

25

[IEEE 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop, BIBMW - Washington, DC, USA (2009.11.1-2009.11.4)] 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop - Mining association rules among gene functions in clusters of similar gene expression maps

An, Li, Obradovic, Zoran, Smith, Desmond, Bodenreider, Olivier, Megalooikonomou, Vasileios

Year:

2009

Language:

english

File:

PDF, 609 KB

english, 2009

26

[IEEE Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06) - Hong Kong, China (2006.12.18-2006.12.22)] Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06) - Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions

Azuaje, Francisco, Wang, Haiying, Zheng, Huiru, Bodenreider, Olivier, Chesneau, Alban

Year:

2006

Language:

english

File:

PDF, 279 KB

english, 2006

27

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Atlanta, GA, USA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine - Semantic Predications for Complex Information Needs in Biomedical Literature

Cameron, Delroy, Kavuluru, Ramakanth, Bodenreider, Olivier, Mendes, Pablo N., Sheth, Amit P., Thirunarayan, Krishnaprasad

Year:

2011

Language:

english

File:

PDF, 471 KB

english, 2011

28

[ACM Press the 2nd ACM SIGHIT symposium - Miami, Florida, USA (2012.01.28-2012.01.30)] Proceedings of the 2nd ACM SIGHIT symposium on International health informatics - IHI '12 - Comparing drug-class membership in ATC and NDF-RT

Mougin, Fleur, Burgun, Anita, Bodenreider, Olivier

Year:

2012

Language:

english

File:

PDF, 496 KB

english, 2012

29

Context-driven automatic subgraph creation for literature-based discovery

Cameron, Delroy, Kavuluru, Ramakanth, Rindflesch, Thomas C., Sheth, Amit P., Thirunarayan, Krishnaprasad, Bodenreider, Olivier

Journal:

Journal of Biomedical Informatics

Year:

2015

Language:

english

File:

PDF, 3.09 MB

english, 2015

30

Exploring adverse drug events at the class level

Winnenburg, Rainer, Sorbello, Alfred, Bodenreider, Olivier

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

31

Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT

Winnenburg, Rainer, Mortensen, Jonathan M, Bodenreider, Olivier

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 3.10 MB

english, 2015

32

Evaluating drug-drug interaction information in NDF-RT and DrugBank

Peters, Lee B, Bahr, Nathan, Bodenreider, Olivier

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 499 KB

english, 2015

33

[Lecture Notes in Computer Science] Data Integration in the Life Sciences Volume 7348 || Pay-as-You-Go Ranking of Schema Mappings Using Query Logs

Bodenreider, Olivier, Rance, Bastien

Year:

2012

Language:

english

File:

PDF, 406 KB

english, 2012

34

[IEEE 2014 IEEE International Conference on Big Data (Big Data) - Washington, DC, USA (2014.10.27-2014.10.30)] 2014 IEEE International Conference on Big Data (Big Data) - MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and its application to SNOMED CT

Zhang, Guo-Qiang, Zhu, Wei, Sun, Mengmeng, Tao, Shiqiang, Bodenreider, Olivier, Cui, Licong

Year:

2014

Language:

english

File:

PDF, 677 KB

english, 2014

35

[ACM Press the 23rd international conference - Seoul, Korea (2014.04.07-2014.04.11)] Proceedings of the 23rd international conference on World wide web - WWW '14 - Don't like RDF reification?

Nguyen, Vinh, Bodenreider, Olivier, Sheth, Amit

Year:

2014

Language:

english

File:

PDF, 673 KB

english, 2014

36

[ACM Press the international conference - Ogunquit, Maine, USA (2001.10.17-2001.10.19)] Proceedings of the international conference on Formal Ontology in Information Systems - FOIS '01 - Aspects of the taxonomic relation in the biomedical domain

Burgun, Anita, Bodenreider, Olivier

Year:

2001

Language:

english

File:

PDF, 1.30 MB

english, 2001

37

Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG

Pathak, Jyotishman, Peters, Lee, Chute, Christopher G, Bodenreider, Olivier

Journal:

Journal of the American Medical Informatics Association

Year:

2010

Language:

english

File:

PDF, 232 KB

english, 2010

38

Extracting Rx information from clinical narrative

Mork, James G, Bodenreider, Olivier, Demner-Fushman, Dina, Doğan, Rezarta Islamaj, Lang, François-Michel, Lu, Zhiyong, Névéol, Aurélie, Peters, Lee, Shooshan, Sonya E, Aronson, Alan R

Journal:

Journal of the American Medical Informatics Association

Year:

2010

Language:

english

File:

PDF, 232 KB

english, 2010

39

Leveraging MEDLINE indexing for pharmacovigilance – Inherent limitations and mitigation strategies

Winnenburg, Rainer, Sorbello, Alfred, Ripple, Anna, Harpaz, Rave, Tonning, Joseph, Szarfman, Ana, Francis, Henry, Bodenreider, Olivier

Journal:

Journal of Biomedical Informatics

Year:

2015

Language:

english

File:

PDF, 1016 KB

english, 2015

40

Interoperability between phenotypes in research and healthcare terminologies—Investigating partial mappings between HPO and SNOMED CT

Dhombres, Ferdinand, Bodenreider, Olivier

Journal:

Journal of Biomedical Semantics

Year:

2016

Language:

english

File:

PDF, 1.21 MB

english, 2016

41

The digital revolution in phenotyping

Oellrich, Anika, Collier, Nigel, Groza, Tudor, Rebholz-Schuhmann, Dietrich, Shah, Nigam, Bodenreider, Olivier, Boland, Mary Regina, Georgiev, Ivo, Liu, Hongfang, Livingston, Kevin, Luna, Augustin, Mal

Journal:

Briefings in Bioinformatics

Year:

2016

Language:

english

File:

PDF, 692 KB

english, 2016

42

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Maui, Hawaii (3 – 7 January 2006)] Biocomputing 2006 - SEMANTIC WEBS FOR LIFE SCIENCES: SESSION INTRODUCTION

STEVENS, ROBERT, BODENREIDER, OLIVIER, LUSSIER, YVES A.

Language:

english

File:

PDF, 250 KB

english

43

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Maui, Hawaii (3 – 7 January 2006)] Biocomputing 2006 - EXPERIENCE IN REASONING WITH THE FOUNDATIONAL MODEL OF ANATOMY IN OWL DL

ZHANG, SONGMAO, BODENREIDER, OLIVIER, GOLBREICH, CHRISTINE

Language:

english

File:

PDF, 693 KB

english

44

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Maui, Hawaii (3 – 7 January 2006)] Biocomputing 2006 - LINKING BIOMEDICAL INFORMATION THROUGH TEXT MINING: SESSION INTRODUCTION

COHEN, K. BRETONNEL, BODENREIDER, OLIVIER, HIRSCHMAN, LYNETTE

Language:

english

File:

PDF, 186 KB

english

45

Comparison of three commercial knowledge bases for detection of drug-drug interactions in clinical decision support

Fung, Kin Wah, Kapusnik-Uner, Joan, Cunningham, Jean, Higby-Baker, Stefanie, Bodenreider, Olivier

Journal:

Journal of the American Medical Informatics Association

Year:

2017

Language:

english

File:

PDF, 217 KB

english, 2017

46

A time-indexed reference standard of adverse drug reactions

Harpaz, Rave, Odgers, David, Gaskin, Greg, DuMouchel, William, Winnenburg, Rainer, Bodenreider, Olivier, Ripple, Anna, Szarfman, Ana, Sorbello, Alfred, Horvitz, Eric, White, Ryen W., Shah, Nigam H.

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 984 KB

english, 2014

47

Toward multimodal signal detection of adverse drug reactions

Harpaz, Rave, DuMouchel, William, Schuemie, Martijn, Bodenreider, Olivier, Friedman, Carol, Horvitz, Eric, Ripple, Anna, Sorbello, Alfred, White, Ryen W., Winnenburg, Rainer, Shah, Nigam H.

Journal:

Journal of Biomedical Informatics

Year:

2017

Language:

english

File:

PDF, 631 KB

english, 2017

48

Co-Evolutionary Rates of Functionally Related Yeast Genes

Mariño-Ramírez, Leonardo, Bodenreider, Olivier, Kantz, Natalie, Jordan, I. King

Journal:

Evolutionary Bioinformatics

Year:

2006

Language:

english

File:

PDF, 430 KB

english, 2006

49

Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs

Cui, Licong, Bodenreider, Olivier, Shi, Jay, Zhang, Guo-Qiang

Journal:

Journal of Biomedical Informatics

Year:

2017

Language:

english

File:

PDF, 804 KB

english, 2017

50

Mining non-lattice subgraphs for detecting missing hierarchical relations and concepts in SNOMED CT

Cui, Licong, Zhu, Wei, Tao, Shiqiang, Case, James T, Bodenreider, Olivier, Zhang, Guo-Qiang

Journal:

Journal of the American Medical Informatics Association

Year:

2017

Language:

english

File:

PDF, 1.13 MB

english, 2017